Javad Zamani

4 Questions 3 Answers 0 Followers

Questions related from Javad Zamani

How do i remove Rotation from protein-membrane system. CG martini- Gromacs?

I have simulated a protein-lipid system as cg with gromacs. Before running , 10 proteins were placed on top of the membrane with the gmx insert command. I checked PDBs. All were right. The...

31 January 2023 1,166 3 View

How can I fix this error converting bpmap file to cdf?

I want to analyse a tilling array without cdf file for this tilling. so I have to convert a bpmap file to cdf. I am using R and aroma.affymetrix package for converting. by running this...

19 February 2015 5,296 2 View

Why do distance between tow cofactors for protein after energy minimization with gromacs increase?

I have a modeled protein 3D structure with tow cofactors.When i do molecular dynamics simulation whit gromacs, distances between them increase up to 9 A .while their distances after homology...

01 January 1970 9,980 1 View

Neighbor List Artifacts in Molecular Dynamics Simulations

I came across a manuscript under review titled “Neighbor List Artifacts in Molecular Dynamics Simulations”. see "Neighbor List Artifacts in Molecular Dynamics Simulations

01 January 1970 553 2 View