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Questions related from Japheth E. Gado
I have a set of n aligned protein sequences. I have constructed a profile hidden Markov model (HMM) from the alignment with hmmbuild in the HMMER package. I would like to compare my constructed...
23 September 2021 7,080 5 View
I have a multiple sequence alignment (MSA) of protein sequences in FASTA format. I will like to compute a sequence identity matrix that shows the sequence identity between each sequence and every...
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I have a dataset of chemical structures and would like to compute ECFPs. I know that I can compute Morgan Fingerprints with RDKit, but these appear to be different from ECFPs...
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