Jack Dela Cruz

3 Questions 5 Answers 0 Followers

Questions related from Jack Dela Cruz

Should we add hydrogen to my (peptide) ligand for docking?

Hello. For energy minimization of my peptide ligand, I am using Chimera software. Is it necessary to add hydrogen to the ligand prior to docking?

24 May 2023 7,887 3 View

How many protein chains should be used in molecular docking?

I am using HMG-CoA reductase (PDB: 1hw9) as my receptor for molecular docking. This protein has 4 chains. I have watched youtube tutorials and they mentioned that to perform mol docking, the...

29 April 2023 6,165 6 View

Why are the bonds of my peptide ligand not complete after converting it to a pdbqt file?

I am conducting a molecular docking study using peptides as ligands. I successfully ran the docking process using autodock vina, and when I viewed it using Discovery Studio, I realized that the...

18 April 2023 8,668 7 View