7 Questions 5 Answers 0 Followers
Questions related from Ibrahim A Osman
how to study a certain type of mutations with another type of protein (not mutation and totally different from mutation) by (bioinformatics tools). What is your opinion and suggestion about this?
15 June 2019 4,613 1 View
Im trying to run x.pdb file but when select force field it give Error(Residue not found).already tried different force field but keep same error. what can to do to solve this error?
04 September 2015 3,131 6 View
I did molecular dynamics simulations for different mutations and I want to compare how hydrogen bonds effects on stability and the other properties of mutations.
23 June 2014 3,326 2 View
I'm trying to study my protein in different pH conditions (using Gromacs) but how can I change the protonation state of some residues of my protein to mimic different pH? I have already used H++...
09 April 2014 9,907 3 View
I want to know the percentages of secondary structure for my protein that I have already done simulation on with GROMACS but I need the commands for the percentages.
28 January 2014 1,142 7 View
I am seeking to use diverse (pressure) with diverse (temperature) in gromacs but I need to know what changes can I do with (md,pr,em) files and if possible if can tell me a good manual or method...
11 January 2014 6,481 3 View
I do with (300k) but when increasing temperature (400,500 k) blowing up. I changed parameters many times but got the same results
25 December 2013 7,239 3 View
