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Questions related from Houcemeddine Othman
Basically, we can use values of 2-4 as interior dielectric constant measured for protein powders. Does this also hold for short peptides (10 amino acids) where most of the residues are solvent...
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It is known that MM-PBSA overestimates the electrostatic binding energy. For such reasons I don't really expect a rigorous behavior of the method in the case of metalloprotein bounded zinc ion,...
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I'm thinking of running a long molecular dynamics simulation for a peptide of 36 amino acids. I generated 10 homology models of the peptide with high quality metrics. I am confused between two...
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