Himanshu Joshi

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Questions related from Himanshu Joshi

Does anyone have experience with calculating the distance between group of atoms using Ptraj in Amber?

I am trying to calculate distance between Center of mass of two groups of atoms located at two ends of my system using distance command in ptraj for AMBER trajectories. For calculating the...

01 January 1970 2,685 2 View

Can anybody describe briefly how to set up a starting structure of PNA for AMBER molecular dynamics simulation?

I want to study PNA using molecular dynamics simulation, can anybody describe briefly how to set up a starting structure of PNA for AMBER molecular dynamics simulation. If any published protocol...

01 January 1970 3,068 1 View