Hemchandra Deka

3 Questions 4 Answers 0 Followers

Questions related from Hemchandra Deka

How do I get the topology data (and parameter) for alpha-ketoglutarate (AKG) and any other modified nitrogenous base?

Hello! I have just started NAMD to run some simulation. Going through the tutorials i find that for generation of a PSF file I need to call a specific topology file. I have found various such...

21 June 2016 10,061 3 View

What is the maximum longitudinal length of the p- orbital from the nucleus?

From Wikipedia: "An atomic orbital is a mathematical function that describes the wave-like behavior of either one electron or a pair of electrons in an atom. This function can be used to...

10 April 2014 2,235 3 View

What are the steps to run MD simulation using acetonitrile as implicit solvent?

I am novice to the MD simulation. For MD simulation I have been following the NAMD tutorials. In the midway I got a bit confused how should I proceed; if I have to run my simulation using...

01 January 1970 4,591 3 View