Harinder Singh

4 Questions 11 Answers 0 Followers

Questions related from Harinder Singh

What is best way to annotate de-novo assembled Transcriptome ? what percentage of genes should I expect to be present in the data. ?

I have a de-novo assembled Transcriptome for four different time points. What is the best way annotate it, right now I am using Trinotate. What percentage of transcripts should I expect to be...

07 June 2016 4,991 3 View

How can I calculate z-score from rpkm or counts values?

Hello everyone, The RNA-seq data from TCGA/COSMIC contains the Z-SCORE, instead of RPKM values. I wanted to perform comparative analysis of TCGA data and GTEx data. But the problem is GTEx data...

03 June 2015 5,905 8 View

How can I know the stable and variable region of a protein?

I would like to know the stable and variable region of a protein. I have the structure/PDB of the protein, I think long simulation can tell me the stable and variable region of the protein. Please...

24 April 2015 6,429 4 View

Is it possible to completely differentiate two different groups of chemical compounds with the use of machine learning?

There are two different groups of chemical compounds having different roles. Can a machine learning method achieve 99% accuracy in classifying two different groups of chemical compounds.

04 December 2012 4,362 16 View