Hamza Arshad Dar

2 Questions 2 Answers 0 Followers

Questions related from Hamza Arshad Dar

What is the most optimum Gromacs-based protein-ligand MD simulation protocol?

Hi everyone, I need to perform MD simulations on a large number of protein-ligand docked complexes (88 or more). Previously, I used Swiss Param website to generate ligand topologies and CHARMM...

03 November 2022 8,551 2 View

Are Alphafold based protein structures better than homology-based models (by MODELLER) if good template structure with 90% similarity is available?

Please guide me. I searched everywhere but could not get a satisfactory answer.

01 July 2022 2,692 2 View