Ghada Osman

4 Questions 8 Answers 0 Followers

Questions related from Ghada Osman

Is there a tool to plot rmsf for selected group of residues in my protein?

hello I have MD simulation results I want to analyze ..I have the plot for the all the residues in the protein using the command rmsf in gromacs can someone show me how to plot rmsf for a specific...

04 April 2016 4,692 3 View

Which program can be used to visualize interaction of protein surface with solvant molecules?

I need an easy free program for visualization of protein solvent interaction. which software do you recommend for this?

03 March 2016 9,179 4 View

MD simulation using gromacs, using the command gmx solvate?

I am simulating a protein in a mixture of water and pyridine as a cosolvent I generated a box of water+py using packmol software can someone tell me what exactly the steps I need to do solvate on...

02 February 2016 4,469 7 View

Is it possible to perform MD simulation of a protein with 532 amino acid in water and in organic solvent?

I am studying the effect of organic co-solvents on the activity of enzymes, I want to perform short MD simulation. Is it possible to simulate large proteins in water or organic solvents using...

11 November 2014 2,358 6 View