Frederico Schmitt Kremer

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Questions related from Frederico Schmitt Kremer

Does anyone know which tool might be a faster alternative to BLAST in DNA-DNA searches?

I need a tool that must be faster, but not necessarily as sensitive, than BLAST in searches of DNA sequence against a DNA database. I know some tools such as Diamond, which is much faster than...

01 January 2018 8,738 5 View

Compare the core-genome mutations of lineages and identify genes associated with lineage-specific adaptation: it this a valid approach?

I want to analyze mutations in the core-genome of Xanthomonas oryzae, a bacteria species that comprises two pathovars: pv. oryzae and pv. oryzicola. I already have the core-genome identified...

01 January 2018 7,176 1 View

A new tool to identify TALE genes in Xanthomonas oryzae genome and their targets in O. sativa: can anyone help by beta-testing?

Hello everyone! I am developing a new tool to identify TALE genes in Xanthomonas oryzae genome and their respective targets in O. sativa. The tool uses AnnoTALE, talgetter, promoterome datasets...

01 January 2018 1,651 0 View