Francesco Antonio Tucci

3 Questions 3 Answers 0 Followers

Questions related from Francesco Antonio Tucci

RNAseq variant calling: why STAR align promotes mismatched overhanging mappings onto introns instead of calling splicing junctions?

Hi, I'm doing variant calling from my RNAseq data on a cell line (Paired End 2X100b, Illumina) I'm following GATK workflows and everything is working almost fine since I can find all the expected...

07 October 2020 4,325 0 View

Why do I get an error in getBamCounts when adding a fasta reference (ExomeDepth)[solved]?

Whenever I try to add a reference fasta file for computing the GC content in the GetBamCounts function: my.countsV6

12 May 2020 5,223 5 View

How I make sense out of Whole Exome Sequencing on cancer cell lines?

I hope you can give me some insights on the right direction to pursue and on some bioinformatic tools I'm ignoring to solve the following bioinformatic problem: I got involved in a cancer research...

02 May 2020 5,951 0 View