Fiona Thorburn

2 Questions 12 Answers 0 Followers

Questions related from Fiona Thorburn

Can you recommend a good program for SNP variants in NGS data?

I have illumina dat of a virus genome, coverage 100 - 1000x and I want to look a SNP variants within the host. I have looked at CLC which has probabilistic and quality variant scoring but are...

02 July 2015 2,276 14 View

How can I generate a consensus sequence from sam file?

I am trying to generate a consensus sequence from a sam file generated with bowtie2. I tried samtools: samtools mpileup -uf ref.fa aln.bam

10 April 2015 792 4 View