Fatemeh Hejazi Amiri

3 Questions 3 Answers 0 Followers

Questions related from Fatemeh Hejazi Amiri

How can I find the specific amino acid name from residues number?

I use VMD for analysis of NAMD molecular simulation. I have gotten a RMSF plot using a scrip via VMD. As it obvious, residue number 1399, attained maximum fluctuation in this plot. Now I wanna...

16 November 2021 7,833 3 View

Is there any way in changing factors in NAMD confidence file to get better RMSD ?

I am a beginner in DM.Every time when I try yo do DM after doing NAMD when I import dcd file and psf file in VMD I get similar RMSD in range between 2-3.5 and its a little different with the plots...

14 April 2021 368 5 View

Upload multi dcd file in VMD

Hi everyone! I have some problem with VMD after finishing NAMD, because of disrupting during running, Now I have 5 dcd files (102 GB) but when I tried to upload them in VMD, it was crushed and the...

01 January 1970 2,186 3 View