Farhan Haq

3 Questions 14 Answers 0 Followers

Questions related from Farhan Haq

What is the cut off value for hypermethylaton and hypomethylation using 450K methylation array?

I am using CHAMP tool to identify differentially methylated probes (DMP). initially, after normalization I got methylation values between 0 to 1. What cut off value I should set to classify probes...

21 April 2017 1,120 5 View

How can I get start end coordinates of each chromosome of zebra fish genome? I need a karyotype file to draw circos plots between human and zebrafish?

Kindly share a file or link if anyone knows. Thanks

22 August 2016 455 3 View

When I download microarray processed/normalized data from GEO it contains multiple probe IDs against one gene. Which probe value I should select?

For example. ERBB2 shows two probe IDs i.e, 216836_s_at and 210930_s_at. Both have different expression values. What I have to do with the two values? Do I have to take the mean of the two?

25 March 2014 2,779 18 View