Farhad Alizadeh

8 Questions 7 Answers 0 Followers

Questions related from Farhad Alizadeh

How are IBDhalf and number of IBDhalf segments calculated?

Hi everybody Is there software to calculate IBDhalf and number of IBDhalf segments? I appreciate your help. Best regards

05 March 2022 9,262 5 View

Is there an article or software that shows the distribution percentage of the maternal haplogroup (mtDNA) of each country or region?

Hi everybody I want to know from the map what percentage of each maternal haplogroup each country or region has. How can I find or create such figures? I appreciate your help. Best regards

12 December 2021 7,128 1 View

How can I merge two chromosomes that are in two separate files and put them in one file?

Hi everybody I have two files from chromosome 22 and chromosome 21 with format ped, samples are the same in the two files. I want to merge two files and make a file with chromosomes 23 and...

14 October 2021 2,224 2 View

What is the difference between genotype and haplotype data in the ped format?

Hi everybody In the ped format for genotype, alleles of any SNP are represented by two columns (one for each allele, separated by a space). Is a column sufficient for the haplotype to...

28 February 2021 2,231 1 View

I want to classification haplotype data by CNN. Can you introduce a suitable network?

hi everybody I converted each word into a vector with one-hot encoding. So that each haplotype has become a two-dimensional matrix. I need CNN to classify them. I appreciate your help. Best regards

26 July 2020 470 2 View

How can admixed individuals be created from different populations?

Hi everybody I want to create an admixed individuals with methods such as HI, GA or CGF. Is there a package or module in R or Python software to do this? Or software running in Windows? I...

09 April 2020 3,753 3 View

Which method most suitable for calculating similarity and genetic distance?

Hi everybody I want to calculate the genetic distance and similarity for ancestral populations. My data is haplotypes. I appreciate your help. Best regards

04 March 2020 8,311 10 View

How To Convert Snp haplotype Data Into 0,1 Matrix? Which software or package is better?

Hi everybody I want to convert HapMap Snp haplotype Data Into 0,1 Matrix so that I can use it in other works. I appreciate your help. Best regards

03 December 2019 3,410 4 View