Edward Valera-Vera

3 Questions 11 Answers 0 Followers

Questions related from Edward Valera-Vera

Is it reasonable to perform Free Energy Landscape (FEL) anallysis on molecular dynamics simulations of 50ns?

Hello everyone, I'm having an issue with a review of a paper. I performed 50ns MD simulations on docking poses to know if the predicted poses were stable. Among the literature doing similar...

25 October 2019 4,838 5 View

Why is GROMACS solvate giving me error when trying to use a mixed solvent in -cs?

Currently I'm trying to solvate a protein with a ethanol-water mixture I made and equilibrated. I did as this page says http://www.gromacs.org/Documentation/How-tos/Mixed_Solvents with a box of...

20 March 2018 2,591 4 View

How can I measure labile phosphate in the presence of ATP?

I have to measure the activity of an enzyme, Arginine kinase, by measuring the liberation of Pi from Phospho-Arginine after reaction occured.First I was using coupled enzymes assay, but when I'm...

01 December 2016 7,462 8 View