Eduardo Zavala

5 Questions 7 Answers 0 Followers

Questions related from Eduardo Zavala

What type of data is this?

I have some mass spec data (please see attached file) but am not sure about the formatting of the data in the "mass spec" column. I have looked up examples of ESI and EI spec data and it does not...

01 January 2018 1,153 6 View

Interpreting phylogenetic tree, how does horizontal genome transfer look like?

I finally got a decent-looking tree using back-translated protein sequences to align the nucleotides of bacterial genome regions that span (12-20)kb. I used NJ algorithm and Jukes-Cantor...

06 June 2016 1,482 3 View

Which phylogenetic approach would be the best for comparing (13-20)kb regions of DNA?

I am working to characterize very specific region between two bacterial species that spans from 13kb to 20kb in size, and each contains from 8 to 13 genes. I plan to use the protein sequences to...

05 May 2016 1,936 9 View

Does anybody have experience finishing bacterial genomes?

I have been working to close the gaps of a bacterial genome and have been using different programs but somehow end up at dead ends. I've used Contiguator, Mauve, and currently CLC genome finishing...

01 January 2016 2,641 8 View

Why is there different alignment results when using .gb or fasta files?

I am using Mauve to align 29 contigs to a bacterial reference genome, but I get different alignments depending on which type of file I use even though its from the same reference genome. I do not...

01 January 2016 3,674 0 View