Edoardo Abeni

6 Questions 4 Answers 0 Followers

Questions related from Edoardo Abeni

Is it possible to perform CHIP and CO-IP in the same reaction?

I'm going to study a TF and to save money and time I'd like to perform CHIP and CO-IP in the same reaction. At the end of the IP, I'd like to separate DNA from protein complex and study them...

12 December 2016 6,897 4 View

Can I reduce FDR cut-off of a list of DEG when I run GO analysis to obtain more enriched GO terms?

Hi everyone, I did a microarray experiment and I got a list of 1.000 DEG using a FDR cut-off

04 March 2015 2,368 2 View

Which is the minimum number of samples required by the referee in a microarray study?

Hi everyone, In a microarray study where for example you compare the gene expression of a certain type of cancer in the population A with the population B, which is the minimum number of cases...

28 January 2015 9,693 6 View

What tools or software can be used to give meaning to a list of transcription factors?

With microarray experiments I got a list of about 100 transcription factors differentially expressed. I would like to give my list biological significance. Are there any tools or databases that...

17 March 2014 9,605 6 View

Can I use the "observed-to-expected CpG ratio" to reduce the list of DMR (differentially methylated region)?

I'm studying DNA methylation using microarrays. I got a long list of DMR and would like to reduce its size. Is it correct to exclude all DMR with an observed-to-expected CpG ratio

04 March 2014 8,996 3 View

How to perform a supervised and unsupervised hierarchical clustering analysis?

I'm looking for papers that talk about theory and give examples of how to perform a supervised and unsupervised hierarchical clustering analysis. In particular when these methods are used in...

20 January 2014 2,085 6 View