Ds Van

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Questions related from Ds Van

How to convert exonerate tool gff2 format output into gff3 format?

I have an exoenrate output file with gff2 format for protein seq alignment. I want to convert this output file into a gff3 format. How can I do this?

08 October 2023 920 1 View

Which file I need to download from Repbase for plant genome annotation?

I'm currently annotating a plant genome. I already identified repeats in the genome using LTRStruct. I need to supplement the resulted file using Repbase data for repeat masking step. Which file...

08 July 2023 7,491 0 View

How can I download RNA sequence data from OneKP project?

I need to download RNA sequence data from OneKP project. I know the plant accession code for the plant I'm looking for. But there are multiple files per plant accession. Which one do I need to...

27 June 2023 1,418 1 View

For a plant genome annotation, if I don't have ESTs and RNA sequences for that plant, can I use ESTs and RNA sequences from closely related species?

Currently I'm working on a plant genome annotation work. For my plant, I don't have any RNA sequences or ESTs. Also very little ESTs and RNA sequence data from closely related species. Is it okay...

27 June 2023 3,489 2 View