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Questions related from Douglas Diehl
I am curious how PWMs are generated from a ChIP-SEQ data set (i.e., how is the data processed?). My understanding is that a PWM is an aggregate way of presenting the binding preference of a DNA...
06 September 2024 2,298 1 View
I have .bed (file format) files, and I would like to make a correlation plot (preferably a line plot) for them. For example, I want the x axis to be distance (i.e., chromosome 1) and the y axis...
04 January 2023 3,572 2 View
I have a pdb file that contains DPPC molecules and other molecules. I want to generate .gro and .top files from this pdb file using the Gromacs command pdb2gmx. I am trying to use the Charmm36...
09 January 2021 4,184 6 View
I am knocking in a DNA fragment with homology to the E. coli genome via a lambda red knock-in protocol. I induce the cells to express lambda red genes during competent cell preparation. The...
30 June 2019 392 4 View
