Dheeraj Prakaash

3 Questions 10 Answers 0 Followers

Questions related from Dheeraj Prakaash

Can I have your opinions on which are the 5 best tools/platforms for prediction of protein transmembrane structure (ranked 1-being best to 5)?

I retrieved a sequence of a receptor protein from Uniprot, and am currently using PSIPRED, TMHMM and Uniprot to compare their transmembrane (TM) predictions of the protein. But I want to ensure if...

02 February 2019 435 1 View

Can anyone please guide me to the code/file in Gromacs (version 4.5x & above) which accepts user defined tabulated potential (-table) and reads it?

Any help on where that particular code/file is located in the Gromacs software is appreciated. I hope it's one single file (probably a C program) which reads user defined tabulated potential...

09 September 2018 3,842 0 View

What does the warning"Using sigma/epsilon based combination rules with user supplied potential function may produce unwanted results" mean in gromacs?

I am using Gromacs 4.5.5. To add a user-specified potential function, I have edited my md.mdp file according to the 4.5.6 manual. After I execute grompp, I see this warning. I am not sure what...

08 August 2018 840 0 View