David Johanson

4 Questions 3 Answers 0 Followers

Questions related from David Johanson

Implementing Bootstrap Renormalization (ReBoot)?

I am having a difficulty in implementing the Permutation Renormalization and Bootstrap method described by Faust et al in Microbial Co-occurrence Relationships in the Human Microbiome. My key...

12 September 2018 5,121 1 View

Any 16S Microbial Abundance Network Analysis Suggestions?

I am an undergraduate neuroscience and bioinformatics research assistant and my personal project has been to explore the gut microbiota of an EAE mouse model. There are three treatment groups:...

01 July 2018 2,774 2 View

Is there an established method for using 16S microbial abundance data to infer the metabolics of the microbiota?

I am currently working on a gut microbiome project focused on the gut microbiome changes in a mouse EAE model. We have data processed with QIIME and most of our analysis has been on R up to this...

26 January 2018 9,607 6 View

Any Suggestions on Selecting Genes or Clustering Techniques for Heatmaps of RNAseq Abundance Data?

So I've recently been involved in an RNAseq project and my investigator is interested in comparing RNA abundances in organoids to corresponding tissue samples taken directly from the organism (a...

01 January 1970 3,713 4 View