Daniele Avancini

3 Questions 2 Answers 0 Followers

Questions related from Daniele Avancini

Multiple sequence alignment and SNP identification/visualization software?

Hi everyone, I need your help to perform my genetic studies. Actually I have more than 500 sequences to analyze in .ab1, .seq, and .fas format and I have to identify single nucleotide...

13 January 2017 3,679 2 View

Bwa not able to map reads from Chip-Seq experiment

Hi all, I downloaded from NCBI a .sra file relative to a chip-Seq experiment (GEO: GSE19235). I converted the .sra file into a .fastq file using fastq-dump. Afterwards, I tried to map the reads...

08 July 2016 1,175 1 View

Is the structure provided by g_cluster (GROMACS) a real frame or an average?

Hi all, I'm trying to perform a cluster analysis on my MD simulation using g_cluster. I'm analysing a simulation of a 11 base pair DNA sequence 10 ns long with 5000 frames.I have no problem using...

10 November 2015 9,508 3 View