Dale Pinili

3 Questions 2 Answers 0 Followers

Questions related from Dale Pinili

What type of data to use for GWAS using microbial counts?

I am exploring GWAS of rice to associate it with its microbial community. The question really is this: should the relative abundance (OTU ratios) be used or just the counts? Currently, I'm using...

04 December 2016 3,963 2 View

How to remove chloroplast?

I'm conducting research on endophytic microbial community. I'm targeting 16S analyses but I realize the problem of chloroplast 16S . Though the last resort to avoid sequencing chloroplast 16S is...

11 November 2016 8,584 3 View

What is the best method to use when inferring species interaction network in microbial communities?

I think the number of species is a significant factor when using different network inference methods. Also, is LASSO a good method especially for microbial community data?

09 June 2016 4,212 4 View