Dag Lyberg

2 Questions 8 Answers 0 Followers

Questions related from Dag Lyberg

Where can I find a good SSE-vectorized Smith-Waterman implementation in C?

I need to do pairwise alignment of nucleotide sequences of length 15-200 nt. Preferably, it should be written in C and accept *char variables for the sequences.

06 June 2013 9,636 3 View

Is anyone familiar with the C code of BWA MEM?

I am writing an own aligner based in part on BWA. I need to know which functions are used to map SE reads in BWA MEM and how you obtain the coordinates of candidate alignment positions. Can...

06 June 2013 5,612 0 View