Chrystelle Delord

8 Questions 23 Answers 0 Followers

Questions related from Chrystelle Delord

Are there R packages able to read genetic datasets in .arp format (Arlequin)?

Hi all! Hope you had a great summer! I was wondering if anyone knew an R package able to load genetic data from .arp files (that is, the Arlequin input file format,...

05 September 2020 6,424 2 View

[Detecting "source" populations] Should I trust these BayesAss results?

Dear all, I would like to use the software BayesAss (Wilson and Rannala, 2003) to estimate contemporary gene flow between several populations sampled from a river network (fish species). I am...

07 May 2018 3,755 0 View

Within-pop contribution to genetic diversity with Caballero & Toro method: implementation in R ?

Hello everyone, I would like to use the coancestry-based method to assess some population contributions to overall genetic diversity, as developed by Caballero & Toro (Conservation Genetics...

11 January 2018 1,465 4 View

Sample size correction for P (polymorphism rate) in population genetics?

Hi everyone, I have a population genetics dataset for several sampling location, with sample size N varying sometimes quite much (sometimes by a factor 2 between two different locations). I would...

13 October 2017 2,981 4 View

[Opinion] What are the best SNP-based measures of genetic diversity ?

Hi everyone, I would be interested in your opinion about most widely used metrics to assess genetic diversity, particularly when considering markers specific features. Expected heterozygosity,...

01 June 2017 2,601 5 View

Max number of libraries on a HiSeq sequencing lane ?

Hi everyone ! I would be interesting in knowing, based on your own experience with Illumina HiSeq sequecing, (1) what was your typical number of libraries to be sequenced simultaneously on a...

07 March 2017 4,419 4 View

How can I filter out reference sequences that get multiple hits in BWA MEM ?

Hi everyone ! I have exported a small number (~500) of 145 pb sequences from a Stacks analyse. I then used it as my "reference genome" (actually a very fragmented and unordered one, consequently...

26 September 2016 2,771 2 View

Pooled RAD data and SNP calling with Snape (on non-model species) ?

Hi everyone, I'm working on RAD-seq pooled data with several species, but only one pool/species ! (RAD data are just meant to be used for SNP calling as another genotyping procedure will be...

18 July 2016 2,051 2 View