Chhavi Dawar

6 Questions 8 Answers 0 Followers

Questions related from Chhavi Dawar

Can someone advise on de novo transcriptome analysis?

I have to deal with huge amount of illumina data for transcriptome of a non - model organism. I am not very sure what tools or software I should use for assembly and annotation? My basic aim is to...

21 October 2013 1,452 4 View

Chip-seq analysis for non model organism - can anyone help?

How should I begin with the chip-seq data analysis for a non model organism (no reference organism available)? Also if someone could suggest good reading material on the same.

19 September 2013 9,484 1 View

I'm running a MD simulation using NAMD, but after the simulation I am having an image of my molecule in the water box. How can that be removed?

The periodic boundary conditions for my simulation are wrong at some point, can anyone suggest a way to know the optimal values for these parameters? This image of my molecule seems to create a...

16 April 2012 9,070 4 View

How to determine the molecular volume of a docked complex?

I have docked two protein subunits and obtained the best result. Now i am required to determine the molecular volume . How can that be obtained ?

27 February 2012 7,505 5 View

How do I evaluate the docking results to find the best one?

I have used patchdock and firedock and hex for docking two protein subunits. I have got the top 10 or 20 results from these servers. Can anyone please suggest how do i determine or evaluate the...

24 February 2012 8,437 10 View

I'm looking for a good online tool / a windows compatible standalone for protein-protein docking plz suggest me some of the best. i have tried AUTODO...

Protein - protein docking to determine protein- protein interactions.

02 January 2012 7,438 10 View