9 Questions 14 Answers 0 Followers
Questions related from Chen Shunmei
1) I use steepest to minimize energy, .mdp as follows, title = bovin cpp = /usr/bin/cpp ; the c pre-processor define = -DFLEXIBLE constraints...
06 June 2013 2,526 2 View
I have some peptides and want to compare their free energy of solvation to see if any difference exists. If I calculate the free energy using GROMACS, and use g_bar -f md*.xvg -o -oi -oh program,...
05 May 2013 7,304 0 View
After simulation we get the RMSF for each protein. Can we use the RMSF to compare these proteins? In most papers, wild type and mutation types are compared. Could we tell which proteins are more...
09 September 2012 5,883 4 View
I have some peptides and want to see the package density of them, but I don't know how to calculate these. I searched online, but did not find any proper method. Can anyone give me any suggestion?...
05 May 2012 337 1 View
I have some peptides and want to see if any different characters between them. Could you give me some suggestions?
02 February 2012 976 0 View
I have some peptides and want to see how many hydrogen bonds each could form. Please recommend software or web sever I can use, Thank you very much!
02 February 2012 3,193 9 View
method or software? Thank you very much!
12 December 2011 3,902 0 View
Software or program, thank you!
11 November 2011 2,555 8 View
Hi, has anyone recommend a program for calculating protein's burial of non-polar surface area?
11 November 2011 1,435 3 View
