15 Questions 42 Answers 0 Followers
Questions related from Budheswar Dehury
Dear All, I want to compute the number of water molecules and their retention period within five angstrom of two catalytci residues belonging to two different chains of a lipid bilayer...
08 August 2019 3,203 14 View
Dear All, Hi..I am doing analysis of Helix properties using gmx helix program of GROMACS 2018.2 installed in a workstation with CentOS. I have created an index fro my TM and then while I use gmx...
09 September 2018 9,846 0 View
Dear All, Hi, I have trajectory file of 500 ns of membrane proteins. Though the file is large enough, I have a problem while I use trjconv option it shows the following error... Program: gmx...
08 August 2018 3,892 6 View
Hi, I am doing an MD simulation of a protein-ligand complex using GROMACS 2018.2. I want restrain my ligand for that I need to generate a position restraint topology for it. I need a shell script...
07 July 2018 9,947 0 View
Hello Everyone, I am trying to run very large systems (membrane protein systems) for longer period of times (say=500 ns). Due to very strict wall time constraint the running MD systems may be...
06 June 2018 8,262 4 View
I have predicted certain group of epitopes. Now I want assess the allegenecity of these predicted epitopes. Dose anybody has any idea which is best tool for allergen prediction... Thanking...
07 July 2015 4,803 2 View
I want to design peptide from group a group of aligned sequences targeting a specific viral region of human. What will be my approach, I need step by step guide so that in each step I can...
12 December 2014 8,987 10 View
Please let me know how to retrieve exact GEO data of plants and infected microbes for comparative analysis of microarray data.
12 December 2013 3,210 1 View
I have the transcript contigs of both the samples generated from SOLid4.0. If anybody ahs an idea how to find the up-regulated and down-regulated transcripts (which are .fasta format) using any...
09 September 2013 9,562 3 View
I want to calculate binding energy. So I want to install APBS in centos. I have cmake. Please help me out if anybody know how to install APBS step by step in CentOS?
09 September 2013 9,512 0 View
Step by step Installation of DSSP for GROMACS in CENTOS.
04 April 2013 6,742 4 View
I want to see the fluctuation in the secondary structure elements in a protein after MD simulation at different time scale. Can anybody please let me know the step by step to install DSSP in CentOS.
04 April 2013 1,245 7 View
To gain in-depth understanding of how plants and pathogens interact at the molecular level and use this knowledge to engineer crops with increased and durable resistance to various diseases. Up...
11 November 2012 1,896 16 View
Special micro array data related to plants infected by pathogens.
11 November 2012 5,719 12 View
According to Flor's hypothesis a gene interacts with another gene in gene-for-gene manner where an incompatible reaction occurs ultimately providing resistance to plants against microbes. Though...
11 November 2012 1,511 4 View
