Bishwa Giri

4 Questions 8 Answers 0 Followers

Questions related from Bishwa Giri

Is is possible/fine to supplement the population genetics analyses using polymorphism data from ChipSeq and RNAseq data?

This question follows the previous question I posted on ResearchGate (please see the attached link). I am now thinking of supplementing my EHH and rEHH and several other population genetics...

04 April 2016 2,141 2 View

Is the sample size of 6 genome reseq data/populations enough for EHH (Extended Halptotype homozygosity) test or something similar?

I have genomic resequenced data for two populations of A. lyrata (6 reseq samples/population). I also want to do different population genetics analyses. I am, aware that the sample size is small...

20 September 2015 4,558 2 View

What are the best house keeping genes to use in qPCR gene expression analysis in plants?

I am planning a qPCR experiment in plant model A. lyrata. As an internal control I first selected several actin homologs as house keeping genes, but it seems like the primers designed for actin...

20 July 2015 5,499 3 View

Can any body share their knowledge about any software they might know of for the analysis of cis-allele expression using RNAseq data?

We recently got RNAseq data from out F1 heterozygotes (plants). The goal is to identify allele specific expression differences for putative and unknown candidates by aligning to Ref-genome.

25 June 2014 2,950 1 View