Benyamin Moraditabar

2 Questions 2 Answers 0 Followers

Questions related from Benyamin Moraditabar

How to run MMPBSA by gromos forcefield toplogy and gromacs 2023.2?

Hi, I have ran a protein-peptide simulation by gromacs 2023.2 and gromos 43a1.ff forcefield for parametrization. Now I can't run gmx_mmpbsa because I came across this Error: Not all bond...

04 November 2024 2,324 4 View

How to do MD simulation of protein with disulfide bond?

Hello! I'm trying to simulate AKT1 protein in water, since this protein structure has a disulfide bond between two cysteine residues and some missing residues so I have to model the sequence with...

15 January 2024 5,940 1 View