Benjamin Brown

2 Questions 5 Answers 0 Followers

Questions related from Benjamin Brown

How can I set up a protein-ligand complex for molecular dynamics using NAMD?

I am using AutoDockVina for some flexible ligand docking. After obtaining the best ligand coordinates from AutoDockVina, I would like to take the two or three separate PDB files (ligand, rigid...

06 June 2014 1,908 7 View

What could be causing an ChemBio3D Ultra Autodock interface error during docking?

I am using ChemBio3D Ultra and its Autodock interface to examine the binding of a peptide ligand to a protein receptor. I successfully installed Autodock4 and Autodock tools and have them routed...

05 May 2014 8,819 2 View