Atul Kumar Jaiswal

3 Questions 1 Answers 0 Followers

Questions related from Atul Kumar Jaiswal

How to calculate Polar, nonpolar and charged contacts in a trajectory?

Dear All, I have a simulation trajectory of DNA, protein complex system. I wanted to calculate total number of polar, nonpolar and charged contacts between DNA and protein. Please give your...

23 September 2019 2,340 0 View

How to do modeling of DNA-Protein complex for all atom MD Simulation?

I have a protein which have some specific domain and it binds to a specific DNA motif. I have modeled this domain with the help of modeler. I wanted to know how can I build the complex structure...

05 February 2019 1,160 3 View

How can I convert a trajectory file from AMBER(.mdcrd) format to .trj format?

I want to convert mt amber trajectory (.mdcrd format) to curves+ compatible .trj format?

15 June 2018 226 2 View