Anita Sinner

3 Questions 6 Answers 0 Followers

Questions related from Anita Sinner

Analysis of ciliate communities using Illumina 18S rRNA sequencing: Do I use standardization techniques (ANCOM/DESeq2/Rarefying) on subsets?

For my master thesis I need to analyse Illumina 18S rRNA sequencing data with regard to the composition of Ciliates (protozoa) in my samples. So the OTU´s that really drive my interest are only...

28 August 2018 6,550 9 View

How do I standardize my HTS data of environmental samples so that I can compare it among samples?

I filtered different amount of sea water and we did Illumina sequencing on the samples obtained. To be able to compare among different samples I would standardize the samples by calculating the...

04 August 2018 7,694 1 View

Biplot the individuals of PCA on abundance data and the variables of PCA on environmental data in R?

I found a graphic where someone used a PCA on abundance data and overlaid it with environmental factors of the sites, see the attached graphic of the publication ciliate distributions and forcing...

23 July 2018 8,992 0 View