Angelo Joshua Victoria

3 Questions 6 Answers 0 Followers

Questions related from Angelo Joshua Victoria

Metagenome Contig Taxonomic Classification Approaches?

If you were a researcher interested in investigating a particular group of prokaryotes (e.g. Cyanobacteria) from an environmental sequencing project, which of the following approaches to taxonomy...

27 October 2018 7,145 3 View

How do I build a genome database of closely-related taxa to my organism?

This might be a basic question but I am wondering how does one approach this task? My aim is to compare specific genes from the published genomes of the closest sequenced species/genera to my...

01 February 2018 1,907 3 View

Read-based and contig-based taxonomic classification for metagenomic data

Hello, I would like to know what are your thoughts on using read-based and contig-based taxonomy as implemented in tools similar to Kraken and Centrifuge. Would read-based taxonomy be different...

01 January 1970 9,233 3 View