Andrew Nkurunungi

2 Questions 6 Answers 0 Followers

Questions related from Andrew Nkurunungi

How can I perform genome wide read alignment using bowtie2 independent of a wrapper?

Is it possible to achieve similar output alignment rate using bowtie2 independently- without a wrapper such as Bismark. I have read and tried to follow the Bowtie manual but the best I have...

20 September 2016 9,010 6 View

Calling DMRs with MethylPipe; the BSprepare step keeps giving me this error, can anybody help me out?

>BSprepare("/Users/aamu_user/Desktop/DMR_pipe/ancestor_output/ancestor_reads.fastq_bismark_sorted_CpG.txt","/Users/aamu_user/Desktop/DMR_pipe/ancestor_output/",...

24 September 2015 2,332 3 View