Ana Valero Rello

2 Questions 4 Answers 0 Followers

Questions related from Ana Valero Rello

How do you create a SNPs alignment (fasta) from combined vcf without gaps where there is not vcf info?

Hi, I'm creating a fasta alignment of concatenated SNPs from a combined vcf file, but I'm having some trouble with the gaps. I'm using the useful script vcf_tab_to_fasta_alignment.pl...

12 August 2019 5,348 5 View

How to get dN/dS values for each branch?

I'm trying to test the selection model in an alignment of 40 coding nucleotide sequences, with its respective ML tree. I would need to get the dN/dS values for each branch of the tree but I'm...

25 December 2013 7,513 2 View