Amit Chaudhary

4 Questions 5 Answers 0 Followers

Questions related from Amit Chaudhary

I would like to create a special index group consisting of protein and lipids (POPG/POPE) and got this error, How can resolve this error?

Please help me to section and merge of group, i am new user and little confused which number i have to choose? Our Bi-layer model comprises of POPG/POPE. (Generted from Membrane builed) Version-...

07 August 2021 8,952 1 View

How to resolve error related to "Atom type not found" in GROMACS - gmx grompp, 2021.2 ?

Command line: gmx grompp -f minim_inflategro.mdp -c system_inflated.gro -p topol.top -r system_inflated.gro -o system_inflated_em.tpr Ignoring obsolete mdp entry 'ns_type' NOTE 1 [file...

02 August 2021 4,961 7 View

Why after mapping twith tophat result shows 0.0% overall read mapping rate??

My result given below: Reads: Input : 238477 Mapped : 2 ( 0.0% of input) 0.0% overall read mapping rate.

25 April 2018 3,845 1 View

What are the ideal procedure for protein-ligand simulation in GROMACS ?

How I can clean & prepare Protein for MD simulations from the ligand-protein complex?

07 December 2016 6,217 3 View