Amirah Fathin

3 Questions 8 Answers 0 Followers

Questions related from Amirah Fathin

Rmsd Graph from Gromacs

Hi everyone, I have a query to ask regarding molecular dynamic simulation by using Gromacs. When the running simulation was accidentally stopped, and re-run, should I need to type any command to...

07 July 2017 1,804 5 View

Atomtype not found?

Dear all Gromacs users,Currently, I'm running my simulation of protein with silica using Gromos54a7 force field. During minimization step, there was fatal error mentioned that, 'Atomtype SDMSO not...

04 April 2016 5,560 8 View

Have anyone experience in building a crystalline silica surface?

For the time being, I plan to use crystalline silica surface for protein detection method in molecular dynamics simulation study, but I still couldn't find any suitable method to build it.Thanks.

01 January 2016 512 2 View