Amir Abbasi

3 Questions 8 Answers 0 Followers

Questions related from Amir Abbasi

How can I parametrize a molecule for simulation in gromacs?

I want to do simulation on a molecule thats not parametrized before. I want to use gromacs as simulation package and opls all atom forcefield. How can I parametrize this molecule to obtain...

10 October 2014 6,240 4 View

Which forcefield is better and has reliable results to study aromatic and aliphatic hydrocarbons?

I'm using gromacs and both all atom and coarse grained forcefields are necessary. Regards.

02 February 2014 3,366 10 View

Is there a special Software to build Custom nucleic acid structure?

l want to build a Custom nucleic acid with 5' to 2' base attachment direction. is there any special software to do it or should I use software like Avogadro?

08 August 2013 2,766 3 View