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Hi, I used PRODRG ( http://davapc1.bioch.dundee.ac.uk/cgi-bin/prodrg ) to prepare topology of my ligand but recently i find out that the charges often don't come out right so we have to modify...
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Hi, in order to visualize ligand - protein interactions in 2D view , i used MOE , ligplot+ and also visual discovery studio. but MOE and ligplot showed me few interactions ( they were almost H -...
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