Alex Ranieri

3 Questions 13 Answers 0 Followers

Questions related from Alex Ranieri

Genemark-ES error

Hi everyone. I'm trying to run Genemark-ES using some scaffolds and getting the error: "Error on system: dna atcg substring locations". Anyone know what to do to fix this? Thanks. By the way, it...

08 August 2014 9,305 4 View

Does anyone have knwoeldge on TRNAscan?

Please, could someone suggest the minimum acceptable score for a valid tRNA prediction with the tRNAscan software? Thanks.

08 August 2014 3,221 2 View

Is it possible to reconstruct a metabolic pathway from unfinished (annotated contigs) genomes?

I have obtained 2 proteobacterial, 1 bacteriodetes and 1 cyanobacterial genome of a metagenome from a lake in Tucuruí, Pará, Brazil. I have the assembled contigs and their annotations. What tools...

10 October 2013 7,873 6 View