Agata Lena Pruska

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Questions related from Agata Lena Pruska

How to adjust an electrostatic potential surface in pyMol after adding phosphorylation sites?

I used I-TASSER to predict the 3D structure of my protein of interest and PyMOL with APBS plugin to add a surface showing the electrostatic potential. Then, with PyTMs plugin, I added three...

26 January 2024 6,201 0 View

How to optimize a protein structure in PyMol after adding phospho residues?

I am using PyMol with PyTMs plugin to visualize possible phosphorylation sites on a protein. I am wondering how I can use the program to calculate and show an optimized protein structure to avoid...

27 November 2023 7,642 1 View