Abhishek Soni

3 Questions 3 Answers 0 Followers

Questions related from Abhishek Soni

How to rotate a trajectory file so that normal of the slab should be in Z-axis but not in X-axis in GROMACS?

Hi, I am using GROMACS V-5.1.4. In my system, I have two slabs mirroring each other and some water molecules in between the slabs. The normal to the slab is X-Axis. I would like to calculated...

08 August 2019 6,984 1 View

Extending Gromacs Simulation from the .gro file?

Hi, I have run a simulation of 200 ns. Now I realized that I wanted to run it till 500 ns in total to explore more dynamics. Instead of extending the simulation by gmx convert-tpr command, I took...

08 August 2018 6,169 4 View

How to create a two slabs at a certain distance in gromacs which are mirror image of each other?

Hi, The genconf command in gromacs only translates the membrane. What should I do if I need to create the mirror image of two slabs along z axis at a certain distance? I have pdb file of one...

07 July 2018 2,003 3 View