.. Abdullah

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Questions related from .. Abdullah

Anyone help me to identify the species of the genus Berberis?

The photo of the species is attached for identification. We have sequenced the chloroplast genome of the species considering it Berberis julianae. However, now some discrepancies arise in the...

01 April 2024 7,956 1 View

Is it possible to get mitochondrial genome from Paired end Illumina data of 10 GB which have about 29 million reads?

Dear All, I want to assembled mitochondrial genome from Illumina data of 150 bp Paired end libraries. I have got two file of 5 GB each in which about 29 millions read are present. When I have done...

30 November 2018 4,708 5 View

How to submit gene containing intron to NCBI and how to defined our CDS regions while submitting whole chloroplast genome?

I want to submit complete chloroplast genome into NCBI. The genes with intron/introns show problem. The NCBI give the error that gene contains stop codon. I don't understad, how to define the CDS...

11 October 2018 8,237 0 View

How to determine Ka/Ks ratio for a gene or genome?

I determined the Ka/Ks ratio for the matK gene. The MAFFT alignment showed 6 SNPs which were non-synonyms and covert six amino acid. The whole size of the matK gene has 1509. I extract alignment...

29 September 2018 2,202 1 View

Does inbred line of maize can be included with hybrid and open pollinated varieties for genetic diversity analysis?

Dear all, I want to know that can we include hybrid in genetic diversity analysis with inbred line and open pollinated varieties. As we know that hybrid is F1 of two parental line. Moreover, Can...

18 March 2018 3,698 7 View