This Beta diversity UPGMA plot (unweighted pair group method) shows the variation among the freshwater lakes but how to infer the result?
Can we get any difference in germination rate in light and dark condition?
26 January 2016 3,877 3 View
What is cophenetic correlation coefficient and how is it computed for a clustering method. Also how can it be used to compare two different distance matrices?
27 April 2020 1,707 1 View
Kindly help if any body have ntsys software for PCR data analysis to make UPGMA dendogram and Jaccard matrix.
11 December 2019 9,926 1 View
Hello all, I am conducting a Bray-curtis / UPGMA analysis in R, based in a binomial dataset (presence and absence of species in specific areas). I want to cluster the areas according to their...
04 January 2019 8,775 3 View
31 December 2018 2,681 3 View
Say I am doing RAPD PCR on some sample sets with 10 different primers, so that I will be generating 10 different binary matrices (based on presence or absence (as 0 and 1) of bands on...
09 March 2018 179 4 View
Hi dear colleagues. I want to apply bootstrap and improving the phylogenetic trees in my study. phylogenetic comparison was done by distance matrix/UPGMA analysis using Kimura 2- parameter by...
02 March 2018 9,839 4 View
02 March 2018 7,996 5 View
the methods of building the phylogenetic tree
12 April 2017 1,050 2 View
03 April 2017 3,180 2 View
Hi everyone, I want to analysis ITS sequences using Maximum Likelihood (phylogenetic) and UPGMA or Neighbor-Joining (phenetic). I have a situation there. I have been confused to standardized the...
11 December 2016 5,604 3 View