Hello Gabriel M. Riaño !

jmodeltest.org has been implemented as a web interface for jMT2, plus a task manager. The web interface captures input data and parameters, whereas the task manager divides jMT2 jobs in different subtasks, one per substitution model. jmodeltest.org looks for infrastructures, which are ready to execute these subtasks immediately. Currently, jmodeltest.org jobs will run in private clouds at the University of Vigo and University of A Coruña, and occasionally at the Galicia Supercomputing Center (CESGA) and Amazon WS EC2 public clouds. When the server workload exceeds the available capacity of the private clouds, resources are requested from the public clouds. The technologies behind jmodeltest.org are Tomcat for the web interface, MySQL for handling subtasks, DRMAA for executing tasks on remote servers and StarCluster(http://star.mit.edu/cluster/) for managing Amazon WS EC2 resources.

Article Jmodeltest.org: Selection of nucleotide substitution models ...

GitHub: https://github.com/ddarriba/jmodeltest2

Basic Installation

==================

1. Requirements:

* Apache ant

http://ant.apache.org/manual/install.html

* Java JDK 1.6

http://www.java.com/en/download

2. In a command-line window type:

$ cd $JMODELTEST_HOME

$ ant jar

3. The distribution will be built in $JMODELTEST_HOME/dist/

jmodeltest2

jModelTest is a tool to carry out statistical selection of best-fit models of nucleotide substitution. It implements five different model selection strategies: hierarchical and dynamical likelihood ratio tests (hLRT and dLRT), Akaike and Bayesian information criteria (AIC and BIC), and a decision theory method (DT). It also provides estimates of model selection uncertainty, parameter importances and model-averaged parameter estimates, including model-averaged tree topologies. jModelTest 2 includes High Performance Computing (HPC) capabilities and additional features like new strategies for tree optimization, model-averaged phylogenetic trees (both topology and branch lenght), heuristic filtering and automatic logging of user activity.

jModelTest discussion group for any question: http://groups.google.com/group/jmodeltest