Dear friends,
Im using cell designer for pathway drawing. I finished it. Then i have to analyse the path. For that i need to import the .xml file into cytoscape. I cant. Some error was occuring. anybody had any idea , please help me...
Thank you.
Try loading the XML file in your browser, if it is a problem with the file, your browser might be able to give you an indication where the error is. Since XML is a mark-up language you could then edit it in your text editor to make any changes necessary to make it work properly, also did you build the necessary files to interpret it?
Thank you... i import my pathway into cytoscape by .owl format... Now i need to prove my pathway is rite...
For that i need some analysis... can u help me...??
Not familiar with either software component, so no, much as I would like to, I can't directly help you, I can listen while you explain your reasoning and try to read into it what you might want to test in your analysis, but that is of questionable value.
Dear sir,
Im constructiong pathway insilico for capsicum Flavonoids pathway. In SOLcyc (solanaceae family pathway database) a wrong pathway is available for reference. Pelargonidin and cyanidin anthocyanins are not expresd in capsicum. But they add those compounds in their path.. till tody there is no evidence for that. But delphinidin is expressed for purple color (in stems, anthers, and ornamental chili fruits). In that reference path they didnt add the delphinidin.
This is the reason for i took this research.
Now i retrieved all the components and reactions in that path and constructed a pathway using cell designer. And i want to prove that my pathway is true. For that any analysis is available??? i am new to this..... if u know please help me sir...
Ok, this doesn't sound like an A.I. problem to me, obviously you are doing bio-chemical modeling. The software involved might be A.I. in derivation, but the subject matter is not. This is the wrong discussion group for attracting biochemists.
Ok sir.... thank u... Any way if u know about tis nd wiling to help me, please mail me..
My Mail id: [email protected]
Thank u...
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