Hello,
I have decided to ask again about interactions.
Explanation what I want to do is on the Figure I uploaded.
How to change interaction in the proper way? When I dock by Glide and do the mm-gbsa I get improper version of binding. I haven't had those problems in the Discovery studio or GOLD and the result was the proper version of binding.
Even I had change the distances in the options (metal bonds) but still the is only connection with one oxide atom.
I need to do this project in Schrodinger Maestro so thank you for the propositions about other programs.
Kind regards